Package: MDplot 1.1.3
Christian Margreitter
MDplot: Visualising Molecular Dynamics Analyses
Provides automatisation for plot generation succeeding common molecular dynamics analyses. This includes straightforward plots, such as RMSD (Root-Mean-Square-Deviation) and RMSF (Root-Mean-Square-Fluctuation) but also more sophisticated ones such as dihedral angle maps, hydrogen bonds, cluster bar plots and DSSP (Definition of Secondary Structure of Proteins) analysis. Currently able to load GROMOS, GROMACS and AMBER formats, respectively.
Authors:
MDplot_1.1.3.tar.gz
MDplot_1.1.3.zip(r-4.5)MDplot_1.1.3.zip(r-4.4)MDplot_1.1.3.zip(r-4.3)
MDplot_1.1.3.tgz(r-4.4-any)MDplot_1.1.3.tgz(r-4.3-any)
MDplot_1.1.3.tar.gz(r-4.5-noble)MDplot_1.1.3.tar.gz(r-4.4-noble)
MDplot_1.1.3.tgz(r-4.4-emscripten)MDplot_1.1.3.tgz(r-4.3-emscripten)
MDplot.pdf |MDplot.html✨
MDplot/json (API)
NEWS
# Install 'MDplot' in R: |
install.packages('MDplot', repos = c('https://mdplot.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mdplot/mdplot/issues
Last updated 3 years agofrom:3f4324a7e2. Checks:OK: 1 WARNING: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 13 2024 |
R-4.5-win | WARNING | Oct 13 2024 |
R-4.5-linux | WARNING | Oct 13 2024 |
R-4.4-win | WARNING | Oct 13 2024 |
R-4.4-mac | WARNING | Oct 13 2024 |
R-4.3-win | WARNING | Oct 13 2024 |
R-4.3-mac | WARNING | Oct 13 2024 |
Exports:clustersclusters_tsdsspdssp_tsfill_binsfind_Nth_occurrenceget_sign_digitsgetFilesgetListOfKeysgetValuehbondhbond_tsintegrate_curveisKeySetload_clustersload_clusters_GROMACSload_clusters_tsload_dsspload_dssp_tsload_hbondload_hbond_tsload_noeload_ramachandranload_rmsdload_rmsfload_TIcurveload_timeseriesload_XPMload_xrmsdnoeparse_argumentsplot_segmentsprint_helpramachandranrmsdrmsd_averagermsfsetNumberDigitssplit_AMBER_atomnamessplit_equidistantsplit_GROMACS_atomnamestestAllowedtestRequiredTIcurvetimeseriestranslate_aminoacidsxrmsd
Dependencies:bitopscaToolsgplotsgtoolsKernSmoothMASSRColorBrewer